The Colletotrichum boninense species complex
Identifieur interne : 001184 ( Main/Exploration ); précédent : 001183; suivant : 001185The Colletotrichum boninense species complex
Auteurs : U. Damm [Pays-Bas] ; P. F. Cannon [Royaume-Uni] ; J. H. C. Woudenberg [Pays-Bas] ; P. R. Johnston [Nouvelle-Zélande] ; B. S. Weir [Nouvelle-Zélande] ; Y. P. Tan [Australie] ; R. G. Shivas [Australie] ; P. W. Crous [Pays-Bas]Source :
- Studies in Mycology [ 0166-0616 ] ; 2012.
Abstract
Although only recently described,
Url:
DOI: 10.3114/sim0002
PubMed: 23136457
PubMed Central: 3458415
Affiliations:
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Cannon</name><affiliation wicri:level="1"><nlm:aff id="A2"> CABI Europe-UK, Bakeham Lane, Egham, Surrey TW20 9TY, UK and Royal Botanic Gardens, Kew, Richmond TW9 3AB, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea> CABI Europe-UK, Bakeham Lane, Egham, Surrey TW20 9TY, UK and Royal Botanic Gardens, Kew, Richmond TW9 3AB</wicri:regionArea><wicri:noRegion>Richmond TW9 3AB</wicri:noRegion></affiliation></author><author><name sortKey="Woudenberg, J H C" sort="Woudenberg, J H C" uniqKey="Woudenberg J" first="J. H. C." last="Woudenberg">J. H. C. Woudenberg</name><affiliation wicri:level="1"><nlm:aff id="A1"> CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands</nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea> CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht</wicri:regionArea><wicri:noRegion>3584 CT Utrecht</wicri:noRegion></affiliation></author><author><name sortKey="Johnston, P R" sort="Johnston, P R" uniqKey="Johnston P" first="P. R." last="Johnston">P. R. Johnston</name><affiliation wicri:level="1"><nlm:aff id="A3"> Landcare Research, Private Bag 92170 Auckland, New Zealand</nlm:aff><country xml:lang="fr">Nouvelle-Zélande</country><wicri:regionArea> Landcare Research, Private Bag 92170 Auckland</wicri:regionArea><wicri:noRegion>Private Bag 92170 Auckland</wicri:noRegion></affiliation></author><author><name sortKey="Weir, B S" sort="Weir, B S" uniqKey="Weir B" first="B. S." last="Weir">B. S. Weir</name><affiliation wicri:level="1"><nlm:aff id="A3"> Landcare Research, Private Bag 92170 Auckland, New Zealand</nlm:aff><country xml:lang="fr">Nouvelle-Zélande</country><wicri:regionArea> Landcare Research, Private Bag 92170 Auckland</wicri:regionArea><wicri:noRegion>Private Bag 92170 Auckland</wicri:noRegion></affiliation></author><author><name sortKey="Tan, Y P" sort="Tan, Y P" uniqKey="Tan Y" first="Y. P." last="Tan">Y. P. Tan</name><affiliation wicri:level="1"><nlm:aff id="A4"> Plant Biosecurity Science, Ecosciences Precinct, Dutton Park, Queensland 4102, Australia</nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea> Plant Biosecurity Science, Ecosciences Precinct, Dutton Park, Queensland 4102</wicri:regionArea><wicri:noRegion>Queensland 4102</wicri:noRegion></affiliation></author><author><name sortKey="Shivas, R G" sort="Shivas, R G" uniqKey="Shivas R" first="R. G." last="Shivas">R. G. Shivas</name><affiliation wicri:level="1"><nlm:aff id="A4"> Plant Biosecurity Science, Ecosciences Precinct, Dutton Park, Queensland 4102, Australia</nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea> Plant Biosecurity Science, Ecosciences Precinct, Dutton Park, Queensland 4102</wicri:regionArea><wicri:noRegion>Queensland 4102</wicri:noRegion></affiliation></author><author><name sortKey="Crous, P W" sort="Crous, P W" uniqKey="Crous P" first="P. W." last="Crous">P. W. Crous</name><affiliation wicri:level="1"><nlm:aff id="A1"> CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands</nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea> CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht</wicri:regionArea><wicri:noRegion>3584 CT Utrecht</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="A5"> Utrecht University, Department of Biology, Microbiology, Padualaan 8, 3584 CH Utrecht, The Netherlands</nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea> Utrecht University, Department of Biology, Microbiology, Padualaan 8, 3584 CH Utrecht</wicri:regionArea><wicri:noRegion>3584 CH Utrecht</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="A6"> Wageningen University and Research Centre (WUR), Laboratory of Phytopathology, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands</nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea> Wageningen University and Research Centre (WUR), Laboratory of Phytopathology, Droevendaalsesteeg 1, 6708 PB Wageningen</wicri:regionArea><wicri:noRegion>6708 PB Wageningen</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">23136457</idno><idno type="pmc">3458415</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3458415</idno><idno type="RBID">PMC:3458415</idno><idno type="doi">10.3114/sim0002</idno><date when="2012">2012</date><idno type="wicri:Area/Pmc/Corpus">001299</idno><idno type="wicri:Area/Pmc/Curation">001297</idno><idno type="wicri:Area/Pmc/Checkpoint">000C14</idno><idno type="wicri:Area/Ncbi/Merge">001138</idno><idno type="wicri:Area/Ncbi/Curation">001138</idno><idno type="wicri:Area/Ncbi/Checkpoint">001138</idno><idno type="wicri:Area/Main/Merge">001196</idno><idno type="wicri:Area/Main/Curation">001184</idno><idno type="wicri:Area/Main/Exploration">001184</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">The <italic>Colletotrichum boninense</italic> species complex</title><author><name sortKey="Damm, U" sort="Damm, U" uniqKey="Damm U" first="U." last="Damm">U. Damm</name><affiliation wicri:level="1"><nlm:aff id="A1"> CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands</nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea> CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht</wicri:regionArea><wicri:noRegion>3584 CT Utrecht</wicri:noRegion></affiliation></author><author><name sortKey="Cannon, P F" sort="Cannon, P F" uniqKey="Cannon P" first="P. F." last="Cannon">P. F. Cannon</name><affiliation wicri:level="1"><nlm:aff id="A2"> CABI Europe-UK, Bakeham Lane, Egham, Surrey TW20 9TY, UK and Royal Botanic Gardens, Kew, Richmond TW9 3AB, UK</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea> CABI Europe-UK, Bakeham Lane, Egham, Surrey TW20 9TY, UK and Royal Botanic Gardens, Kew, Richmond TW9 3AB</wicri:regionArea><wicri:noRegion>Richmond TW9 3AB</wicri:noRegion></affiliation></author><author><name sortKey="Woudenberg, J H C" sort="Woudenberg, J H C" uniqKey="Woudenberg J" first="J. H. C." last="Woudenberg">J. H. C. Woudenberg</name><affiliation wicri:level="1"><nlm:aff id="A1"> CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands</nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea> CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht</wicri:regionArea><wicri:noRegion>3584 CT Utrecht</wicri:noRegion></affiliation></author><author><name sortKey="Johnston, P R" sort="Johnston, P R" uniqKey="Johnston P" first="P. R." last="Johnston">P. R. Johnston</name><affiliation wicri:level="1"><nlm:aff id="A3"> Landcare Research, Private Bag 92170 Auckland, New Zealand</nlm:aff><country xml:lang="fr">Nouvelle-Zélande</country><wicri:regionArea> Landcare Research, Private Bag 92170 Auckland</wicri:regionArea><wicri:noRegion>Private Bag 92170 Auckland</wicri:noRegion></affiliation></author><author><name sortKey="Weir, B S" sort="Weir, B S" uniqKey="Weir B" first="B. S." last="Weir">B. S. Weir</name><affiliation wicri:level="1"><nlm:aff id="A3"> Landcare Research, Private Bag 92170 Auckland, New Zealand</nlm:aff><country xml:lang="fr">Nouvelle-Zélande</country><wicri:regionArea> Landcare Research, Private Bag 92170 Auckland</wicri:regionArea><wicri:noRegion>Private Bag 92170 Auckland</wicri:noRegion></affiliation></author><author><name sortKey="Tan, Y P" sort="Tan, Y P" uniqKey="Tan Y" first="Y. P." last="Tan">Y. P. Tan</name><affiliation wicri:level="1"><nlm:aff id="A4"> Plant Biosecurity Science, Ecosciences Precinct, Dutton Park, Queensland 4102, Australia</nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea> Plant Biosecurity Science, Ecosciences Precinct, Dutton Park, Queensland 4102</wicri:regionArea><wicri:noRegion>Queensland 4102</wicri:noRegion></affiliation></author><author><name sortKey="Shivas, R G" sort="Shivas, R G" uniqKey="Shivas R" first="R. G." last="Shivas">R. G. Shivas</name><affiliation wicri:level="1"><nlm:aff id="A4"> Plant Biosecurity Science, Ecosciences Precinct, Dutton Park, Queensland 4102, Australia</nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea> Plant Biosecurity Science, Ecosciences Precinct, Dutton Park, Queensland 4102</wicri:regionArea><wicri:noRegion>Queensland 4102</wicri:noRegion></affiliation></author><author><name sortKey="Crous, P W" sort="Crous, P W" uniqKey="Crous P" first="P. W." last="Crous">P. W. Crous</name><affiliation wicri:level="1"><nlm:aff id="A1"> CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands</nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea> CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht</wicri:regionArea><wicri:noRegion>3584 CT Utrecht</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="A5"> Utrecht University, Department of Biology, Microbiology, Padualaan 8, 3584 CH Utrecht, The Netherlands</nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea> Utrecht University, Department of Biology, Microbiology, Padualaan 8, 3584 CH Utrecht</wicri:regionArea><wicri:noRegion>3584 CH Utrecht</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="A6"> Wageningen University and Research Centre (WUR), Laboratory of Phytopathology, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands</nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea> Wageningen University and Research Centre (WUR), Laboratory of Phytopathology, Droevendaalsesteeg 1, 6708 PB Wageningen</wicri:regionArea><wicri:noRegion>6708 PB Wageningen</wicri:noRegion></affiliation></author></analytic><series><title level="j">Studies in Mycology</title><idno type="ISSN">0166-0616</idno><idno type="eISSN">1872-9797</idno><imprint><date when="2012">2012</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p id="P6">Although only recently described, <italic>Colletotrichum boninense</italic> is well established in literature as an anthracnose pathogen or endophyte of a diverse range of host plants worldwide. It is especially prominent on members of <italic>Amaryllidaceae</italic>, <italic>Orchidaceae</italic>, <italic>Proteaceae</italic> and <italic>Solanaceae</italic>. Reports from literature and preliminary studies using ITS sequence data indicated that <italic>C. boninense</italic> represents a species complex. A multilocus molecular phylogenetic analysis (ITS, ACT, TUB2, CHS-1, GAPDH, HIS3, CAL) of 86 strains previously identified as <italic>C. boninense</italic> and other related strains revealed 18 clades. These clades are recognised here as separate species, including <italic>C. boninense s. str.</italic>, <italic>C. hippeastri</italic>, <italic>C. karstii</italic> and 12 previously undescribed species, <italic>C. annellatum</italic>, <italic>C. beeveri</italic>, <italic>C. brassicicola</italic>, <italic>C. brasiliense</italic>, <italic>C. colombiense</italic>, <italic>C. constrictum</italic>, <italic>C. cymbidiicola</italic>, <italic>C. dacrycarpi</italic>, <italic>C. novae-zelandiae</italic>, <italic>C. oncidii</italic>, <italic>C. parsonsiae</italic> and <italic>C. torulosum.</italic> Seven of the new species are only known from New Zealand, perhaps reflecting a sampling bias. The new combination <italic>C. phyllanthi</italic> was made, and <italic>C. dracaenae</italic> Petch was epitypified and the name replaced with <italic>C. petchii</italic>. Typical for species of the <italic>C. boninense</italic> species complex are the conidiogenous cells with rather prominent periclinal thickening that also sometimes extend to form a new conidiogenous locus or annellations as well as conidia that have a prominent basal scar. Many species in the <italic>C. boninense</italic> complex form teleomorphs in culture.</p><sec id="S1"><title>Taxonomic novelties:</title><p id="P7"><bold>New combination</bold> - <italic>Colletotrichum phyllanthi</italic> (H. Surendranath Pai) Damm, P.F. Cannon & Crous. <bold>Name replacement</bold> - <italic>C. petchii</italic> Damm, P.F. Cannon & Crous. <bold>New species</bold> - <italic>C. annellatum</italic> Damm, P.F. Cannon & Crous, <italic>C. beeveri</italic> Damm, P.F. Cannon, Crous, P.R. Johnst. & B. Weir, <italic>C. brassicicola</italic> Damm, P.F. Cannon & Crous, <italic>C. brasiliense</italic> Damm, P.F. Cannon, Crous & Massola, <italic>C. colombiense</italic> Damm, P.F. Cannon, Crous, <italic>C. constrictum</italic> Damm, P.F. Cannon, Crous, P.R. Johnst. & B. Weir, <italic>C. cymbidiicola</italic> Damm, P.F. Cannon, Crous, P.R. Johnst. & B. Weir, <italic>C. dacrycarpi</italic> Damm, P.F. Cannon, Crous, P.R. Johnst. & B. Weir, <italic>C. novae-zelandiae</italic> Damm, P.F. Cannon, Crous, P.R. Johnst. & B. Weir, <italic>C. oncidii</italic> Damm, P.F. Cannon & Crous, <italic>C. parsonsiae</italic> Damm, P.F. Cannon, Crous, P.R. Johnst. & B. Weir, <italic>C. torulosum</italic> Damm, P.F. Cannon, Crous, P.R. Johnst. & B. Weir. <bold>Typifications: Epitypifications</bold> - <italic>C. dracaenae</italic> Petch.</p></sec></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Afanador Kafuri, L" uniqKey="Afanador Kafuri L">L Afanador-Kafuri</name></author><author><name sortKey="Minz, D" uniqKey="Minz D">D Minz</name></author><author><name sortKey="Maymon, M" uniqKey="Maymon M">M Maymon</name></author><author><name sortKey="Freeman, S" uniqKey="Freeman S">S Freeman</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Allescher, A" uniqKey="Allescher A">A Allescher</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Armstrong Cho, Cl" uniqKey="Armstrong Cho C">CL Armstrong-Cho</name></author><author><name sortKey="Banniza, S" uniqKey="Banniza S">S Banniza</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Arx, Ja Von" uniqKey="Arx J">JA von 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Damm</name></noRegion><name sortKey="Crous, P W" sort="Crous, P W" uniqKey="Crous P" first="P. W." last="Crous">P. W. Crous</name><name sortKey="Crous, P W" sort="Crous, P W" uniqKey="Crous P" first="P. W." last="Crous">P. W. Crous</name><name sortKey="Crous, P W" sort="Crous, P W" uniqKey="Crous P" first="P. W." last="Crous">P. W. Crous</name><name sortKey="Woudenberg, J H C" sort="Woudenberg, J H C" uniqKey="Woudenberg J" first="J. H. C." last="Woudenberg">J. H. C. Woudenberg</name></country><country name="Royaume-Uni"><noRegion><name sortKey="Cannon, P F" sort="Cannon, P F" uniqKey="Cannon P" first="P. F." last="Cannon">P. F. Cannon</name></noRegion></country><country name="Nouvelle-Zélande"><noRegion><name sortKey="Johnston, P R" sort="Johnston, P R" uniqKey="Johnston P" first="P. R." last="Johnston">P. R. Johnston</name></noRegion><name sortKey="Weir, B S" sort="Weir, B S" uniqKey="Weir B" first="B. S." last="Weir">B. S. Weir</name></country><country name="Australie"><noRegion><name sortKey="Tan, Y P" sort="Tan, Y P" uniqKey="Tan Y" first="Y. P." last="Tan">Y. P. Tan</name></noRegion><name sortKey="Shivas, R G" sort="Shivas, R G" uniqKey="Shivas R" first="R. G." last="Shivas">R. G. Shivas</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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